Sequence Data
| Format | Extensions |
|---|---|
| FASTA | .fasta, .fa, .fna |
| FASTQ | .fastq, .fq |
| Compressed | .gz, .bz2 |
Alignments
| Format | Extensions |
|---|---|
| SAM | .sam |
| BAM | .bam |
| CRAM | .cram |
Variants
| Format | Extensions |
|---|---|
| VCF | .vcf |
| BCF | .bcf |
| GVCF | .g.vcf |
Tabular
| Format | Extensions |
|---|---|
| CSV | .csv |
| TSV | .tsv, .txt |
| Excel | .xlsx, .xls |
Annotations
| Format | Extensions |
|---|---|
| GFF/GTF | .gff, .gff3, .gtf |
| BED | .bed |