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Workflow templates capture successful analysis pipelines so you can reuse them with new data.

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Using a Template

When you start a new task, suggested workflow templates appear in the chat area:
  1. Click on a template to see what it does
  2. Click Use Template to apply it
  3. Provide the required input files when prompted

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Creating a Template

After Biomni finishes an analysis you want to reuse:
  1. Click Save as Template on the plan view
  2. Enter a descriptive name
  3. Add a description explaining when to use it
  4. Click Save

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What Gets Captured

When you save a template, Biomni captures:
  • Steps: Each operation in order
  • Tools: Specific tools used
  • Parameters: All configuration values
  • Input requirements: Required file types

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Viewing Your Templates

  1. Go to Resources in the sidebar
  2. Select the Templates tab
  3. Browse or search your saved templates

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Tips

Include analysis type and key details:
  • Good: RNAseq_DESeq2_Human
  • Bad: my_pipeline_v2
One template = one analysis goal. Don’t combine unrelated analyses.